New Scientific Publication within WP2

A collaborative article depicting novel genetic and hematological predictors of response to neoadjuvant chemoradiotherapy in locally advanced rectal cancer was published in Frontiers in Genetics.
Marinkovic M, Stojanovic-Rundic S, Stanojevic A, Ostojic M, Gavrilovic D, Jankovic R, Maksimovic N, Stroggilos R, Zoidakis J, Castellví-Bel S, Fijneman RJA, and Cavic M. Exploring novel genetic and hematological predictors of response to neoadjuvant chemoradiotherapy in locally advanced rectal cancer. Front. Genet. 2023, 14:1245594. doi: 10.3389/fgene.2023.1245594. link: https://www.frontiersin.org/articles/10.3389/fgene.2023.1245594/full

The standard treatment for locally advanced rectal cancer is neoadjuvant chemoradiotherapy. To select patients who would benefit the most from this treatment, there is a need for predictive biomarkers. The aim of this study was to evaluate the role of clinical, pathological, radiological, inflammation-related genetic, and hematological parameters in the prediction of post-nCRT response. The obtained results showed that factors associated with favorable response to neoadjuvant chemoradiotherapy were tumor morphology and hematological parameters which can be easily and routinely derived from initial laboratory results (NMR, eosinophil, basophil and monocyte counts) in a minimally invasive manner. Using various metrics, an aggregated score of the initial eosinophil, basophil, and monocyte counts demonstrated the best predictive performance.

Congratulations to the first author Mladen Marinkovic, MD, for a great achievement and a wonderful rest of his PhD journey ahead!



Dr Milena Cavic and Prof. Makis Zoidakis lecturers at 5ISSCBSD

STEPUPIORS PIs Dr Milena Cavic and Prof. Makis Zoidakis participated as lecturers at the 5th International Summer School on  Circular Bio-economy and Sustainable Development organized by the National and Kapodistrian University of Athens, in Thessaloniki, Greece, and online.
Dr Cavic presented project aims through implementing principles of circular bio-economy and sustainable development in the establishment of a first cancer Biobank and Research Management Office at the Institute for Oncology and Radiology of Serbia, while Prof Zoidakis presented information concerning the contribution of proteomics to sustainable development.
The summer school was very useful for familiarization with current trends in bioeconomy, with Increased interest particularly in the Balkan region. New aspects and perspectives in sustainability and development were delivered highlighting  hands-on student involvement. Vivid discussions led to new ideas and collaborative approaches for future grant applications aimed at sustainable scientific research.



STEPUPIORS Outreach events in kindergartens

Our first project year was filled with many important and inspiring events. Of particular importance was our work with young people and children on their education about healthy food and a healthy lifestyle. In addition to visiting elementary schools, we also visited children from two kindergartens in Belgrade, PU “Poletarac” from Palilula and PU “Lunja” from Vračar. Dr Ana Đurić, Dr Milena Cavic and Dr Marija Đorđić Crnogorac, in a good atmosphere through games and fun, encouraged children to think about healthy lifestyle habits that are extremely important for their future and proper psychophysical development. How the children accepted these topics and how willing they were to learn new knowledge is best described by their numerous drawings that we received as a gift.

The STEPUPIORS team invites you to selflessly continue to spread your knowledge about all that is good, especially among those who are most important to us and who will come after us. Our children’s knowledge and skills are changing the world for the better, and we are honored to be able to contribute in our own way.



Participation at EACR23 Congress, June 12-15, 2023, Torino, Italy

Project members Ana Đurić and Aleksandra Stanojević present project results within WP1 and WP2 at the European Association for Cancer Research (EACR) EACR 2023 Congress held on June 12-15, 2023 in Torino Italy.
Dr Đurić and Ms Stanojević presented two posters and discussed with congress participants on future collaboration prospects.

* P-0466 The Road from Human Sample Collections to the First Rectal Cancer Biobank at the Institute for Oncology and Radiology of Serbia (Ana Đurić et al.)

* P-0083 Correlation between genetic and proteomic expression of predictive biomarkers of response to neoadjuvant chemoradiotherapy in locally advanced rectal cancer identified by data independent acquisition mass spectrometry (Aleksandra Stanojević et al.)



Omics data generation and integration with clinical information" STEPUPIORS workshop

The “Omics data generation and integration with clinical information” STEPUPIORS workshop organized on June 01-02, 2023 in Athens, Greece demonstrated the importance of application of omics techniques in oncological research and clinical practice. The participants A were motivated to discuss how to translate data acquired by various omics techniques into their clinical/laboratory practice.

Participant feedback:
“The workshop on various omics techniques was highly enlightening, as it effectively demonstrated the potential of omics and its integration into clinical practice for the benefit of cancer patients.”
“I was particularly impressed by how the course showcased the practical applications of omics in understanding the underlying mechanisms of cancer and its personalized approach to diagnosis, treatment, and patient management.”



STEPUPIORS free online workshop: OMICS DATA GENERATION AND INTEGRATION WITH CLINICAL INFORMATION

June 01–02, 2023

STEPUPIORS team invites you to join the exciting online training within WP2 entitled “Omics data generation and integration with clinical information”. The workshop will address the main principles of proteomics, transcriptomics, and genomics along with computational tools for integrating omics datasets and linking them to clinical data. Statistical and bioinformatics tools available for the analysis of omics and clinical data will also be presented during this two-day workshop.

The training is scheduled for June 1 and 2, 2023, and the detailed program is available at the link.

Login information:
Thursday June 1st

(Athens time, GMT+3)
Topic: STEPUPIORS workshop – Omics data generation and integration with clinical information – Day 1
Time: Jun 1, 2023 09:00 AM Athens

Join Zoom Meeting
https://us06web.zoom.us/j/85682788875?pwd=RXduUE1sTUxXaXZaRkp1Zkt0WmF6UT09
Meeting ID: 856 8278 8875
Passcode: 870977

Friday June 2nd
(Athens time, GMT+3)
Topic: STEPUPIORS workshop – Omics data generation and integration with clinical information– Day 2
Time: Jun 2, 2023 09:00 AM Athens

Join Zoom Meeting
https://us06web.zoom.us/j/87626084546?pwd=cTdrejFPbk5EUzRTOE53eldKYnNKdz09
Meeting ID: 876 2608 4546
Passcode: 172706



Lectures at “Biochemistry in service of health – modern approaches in biomedical research” student course

During the period May 14-20, 2023, STEPUPIORS team members Aleksandra Stanojević, Ana Đurić and Milena Čavić participated as lecturers at the course “Biochemistry in service of health – modern approaches in biomedical research”, organized by the Biochemical Society of Serbia in Belgrade and Novi Sad, Serbia. Dr Čavić gave a lecture “Molecular genetics methods in modern diagnostics and scientific research” during which she promoted the STEPUPIORS project and invited interested students from 4 Universities in Serbia (University of Belgrade, University of Novi Sad, University of Niš, University of Kragujevac) to join the efforts of profiling new predictive biomarkers for rectal cancer in their future studies. Ms Stanojević discussed her PhD work on rectal cancer within the project with students and answered questions regarding the specificities of working in a health research center. Dr Đurić discussed with students about using cell cultures for metabolomics approaches and functional validation of identified biomarkers for rectal cancer.

The students were very interested in all aspects of the presented work, and expressed wishes for a follow-up visit to the Institute for Oncology and Radiology of Serbia and further studies on the topic within their Masters and PhD thesis.



First scientific publication within WP2

Check out the first exciting STEPUPIORS Project scientific results by Aleksandra Stanojević, Martina Samiotaki, Vasiliki Lygirou, Mladen Marinkovic, Vladimir Nikolic, Suzana Stojanovic-Rundic, Radmila Jankovic, Antonia Vlahou, George Panayotou, Remond Fijneman, Sergi Castellvi-Bel, Ieronymos Zoidakis and Milena Cavic!

Stanojevic A, Samiotaki M, Lygirou V, Marinkovic M, Nikolic V, Stojanovic-Rundic S, Jankovic R, Vlahou A, Panayotou G, Fijneman R.J.A, Castellvi-Bel S, Zoidakis J , Cavic M. Data independent acquisition mass spectrometry (DIA-MS) analysis of FFPE rectal cancer samples offers in depth proteomics characterization of response to neoadjuvant chemoradiotherapy. medRxiv 2023.05.12.23289671; doi: https://doi.org/10.1101/2023.05.12.23289671